PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_86458_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 162aa    MW: 18035.2 Da    PI: 10.1012
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_86458_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.88.7e-21858155
                                  AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                         s+++GVr ++ +gr++AeIrd ++    ++r +lg+f+taeeAa a+++a+++l+g
  cra_locus_86458_iso_1_len_703_ver_3  8 SHFRGVRKRP-WGRYAAEIRDpWK----KTRRWLGTFDTAEEAALAYDEAARSLRG 58
                                         78********.**********883....5999**********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.7E-13858IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-22866IPR016177DNA-binding domain
CDDcd000183.80E-29865No hitNo description
Gene3DG3DSA:3.30.730.101.2E-30965IPR001471AP2/ERF domain
PROSITE profilePS5103221.746966IPR001471AP2/ERF domain
SMARTSM003801.7E-32972IPR001471AP2/ERF domain
PRINTSPR003675.0E-101021IPR001471AP2/ERF domain
PRINTSPR003675.0E-103248IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
XVAAPKESHF RGVRKRPWGR YAAEIRDPWK KTRRWLGTFD TAEEAALAYD EAARSLRGPK  60
AKTNFGGQGG GLSSALVISS PPVVAQPPPV RVFAEKLPHW CSPAFSGANV DDRSREFVTP  120
RSEYTGYKLE NIGVAISEQE QKEMKSEKKP FLFDLNLPAP LF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-20665262ATERF1
3gcc_A4e-20665262ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009618026.15e-61PREDICTED: ethylene-responsive transcription factor 4-like
TrEMBLA0A068U5A22e-70A0A068U5A2_COFCA; Uncharacterized protein
STRINGVIT_07s0141g00690.t013e-49(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA141361212